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On this page:
   43.3    Execute Script Function
  • Smile CDR CLI (smileutil)
  • 43.0 Introduction
  • 43.1 Bulk Import
  • 43.2 Create FHIR Package
  • 43.3 Execute Script Function
  • 43.4 Export ConceptMap to CSV
  • 43.5 HL7 v2.x Analyze Flat File
  • 43.6 HL7 v2.x Transmit Flat File
  • 43.7 Import CSV to ConceptMap
  • 43.8 Map and Upload CSV Bulk Import File
  • 43.9 Migrate Database
  • 43.10 Clear Database Migration Lock
  • 43.11 Module Config Properties Export
  • 43.12 Reindex Terminology
  • 43.13 Synchronize FHIR Servers
  • 43.14 Upgrade H2 Database File
  • 43.15 Upload Bundle Files
  • 43.16 Upload CSV Bulk Import File
  • 43.17 Upload Sample Dataset
  • 43.18 Upload Terminology
  • 43.19 Generate Realtime Export Schema
  • 43.20 Validate FHIR Resources
    • 43.5    HL7 v2.x Analyze Flat File   
       Table of Contents

    Export ConceptMap to CSV

    43.4.1smileutil: Export ConceptMap to CSV

     

    The export-conceptmap-to-csv command can be used to export a ConceptMap resource as a CSV file of terminology mappings.

    Note: In cases where multiple versions of a given ConceptMap have been loaded, the export-concept-to-csv command will only export the current or most recently updated version of the requested ConceptMap resource.

    The first row of the CSV file will include the following headers:

    • SOURCE_CODE_SYSTEM – ConceptMap.group.source
    • SOURCE_CODE_SYSTEM_VERSION – ConceptMap.group.sourceVersion
    • TARGET_CODE_SYSTEM – ConceptMap.group.target
    • TARGET_CODE_SYSTEM_VERSION – ConceptMap.group.targetVersion
    • SOURCE_CODE – ConceptMap.group.element.code
    • SOURCE_DISPLAY – ConceptMap.group.element.display
    • TARGET_CODE – ConceptMap.group.element.target.code
    • TARGET_DISPLAY – ConceptMap.group.element.target.display
    • EQUIVALENCE – ConceptMap.group.element.target.equivalence (ConceptMapEquivalence)
    • COMMENT – ConceptMap.group.element.target.comment

    43.4.2Usage

      
    bin/smileutil export-conceptmap-to-csv -v "r4" -t "http://localhost:8000/" -u "http://example.com/conceptmap" -f "output.csv" -l

    In the example above, http://localhost:8000/ is the FHIR endpoint to which the mappings will be uploaded.

    43.4.3Options

     
    • -v [version] (or --fhir-version [version]) – (optional) The version of FHIR supported by the server.
    • -t [base URL] (or --target [base URL]) – This argument should point to the base URL of the target FHIR server endpoint.
    • -u [ConceptMap URL] (or --url [ConceptMap URL]) – The URL of the ConceptMap resource to be imported/exported (i.e. ConceptMap.url).
    • -f [filename] (or --filename [filename]) – The path and filename of the CSV file to be exported (e.g. ./output.csv).
    • -l or (or --logging) – (optional) If specified, verbose logging will be used.
    • -b [username:password] (or --basic-auth [username:password]) – (optional) If specified, provides a username and password that will be supplied to the server in an HTTP Basic Authorization header in the form of "username:password". If the value supplied is "PROMPT", smileutil will prompt the user to enter credentials interactively.
    • --bearer-token [token] – (optional) If specified, provides a bearer token that will be supplied to the server in an HTTP Authorization header. If the value supplied is "PROMPT", smileutil will prompt the user to enter a bearer token interactively.
    • --tls-auth [filename] – (optional) If specified, this parameter supplies a path and filename for a Smile Util TLS JSON Authentication File that will be used to authenticate target FHIR server endpoints secured through HTTPS.
       43.3    Execute Script Function
  • Smile CDR CLI (smileutil)
  • 43.0 Introduction
  • 43.1 Bulk Import
  • 43.2 Create FHIR Package
  • 43.3 Execute Script Function
  • 43.4 Export ConceptMap to CSV
  • 43.5 HL7 v2.x Analyze Flat File
  • 43.6 HL7 v2.x Transmit Flat File
  • 43.7 Import CSV to ConceptMap
  • 43.8 Map and Upload CSV Bulk Import File
  • 43.9 Migrate Database
  • 43.10 Clear Database Migration Lock
  • 43.11 Module Config Properties Export
  • 43.12 Reindex Terminology
  • 43.13 Synchronize FHIR Servers
  • 43.14 Upgrade H2 Database File
  • 43.15 Upload Bundle Files
  • 43.16 Upload CSV Bulk Import File
  • 43.17 Upload Sample Dataset
  • 43.18 Upload Terminology
  • 43.19 Generate Realtime Export Schema
  • 43.20 Validate FHIR Resources
    • 43.5    HL7 v2.x Analyze Flat File