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Smile CDR v2023.05.PRE
On this page:
Welcome to Smile CDR
Table of Contents
1.0
Smile CDR Maturity Model
1.1
List of Features by Maturity
1.2
Changelog (2022 Releases)
1.3
Changelog (2021 Releases)
1.4
Changelog (2020 Releases)
1.5
Changelog (2019 Releases)
1.6
Changelog (2018 Releases)
1.7
Changelog (2017 Releases)
1.8
Getting Started
Basic Concepts
2.0
Platform Requirements
2.1
Installation
Installing Smile CDR
3.0
Docker Container Installation
3.1
Unix Service Installation
3.2
Tuning your Installation
3.3
Message Brokers
3.4
Message Broker Failure Management
3.5
Message Broker: ActiveMQ
3.6
Message Broker: Kafka
3.7
Pre-Seeding Configuration and Data
3.8
Upgrading Smile CDR
3.9
Production Checklist
3.10
Module Licensing
3.11
Tutorial and Tour
Preamble and Setup
4.0
SMART on FHIR Apps
4.1
Processing HL7 v2.x Feeds
4.2
Federated OAuth2/OIDC Setup
4.3
The FHIR Standard
FHIR Introduction
5.0
FHIR CRUD Operations
5.1
FHIR Searching Basics
5.2
FHIR Search: References and Includes
5.3
FHIR Search: Custom Search Parameters
5.4
FHIR Transactions and Batches
5.5
FHIRPath Expressions
5.6
FHIR Storage
Concepts in Smile CDR
6.0
FHIR Storage Modules
6.1
FHIR Endpoint Module
6.2
FHIRWeb Console
6.3
OpenAPI / Swagger Support
6.4
FHIR Endpoint Customization
6.5
Resource IDs
6.6
Search Parameters
6.7
Search Parameter Features
6.8
Phonetic Search Parameters
6.9
Search Parameter Tuning
6.10
Searching for Data
6.11
Creating Data
6.12
Reading Data
6.13
Updating Data
6.14
Deleting Data
6.15
Binary Data
6.16
Request Tracing and Provenance
6.17
FHIR Versions
6.18
Versioned Resource References
6.19
Tags, Profiles, and Security Labels
6.20
Clinical Quality Language (CQL)
6.21
Partitioning and Multitenancy
6.22
Custom Resource Types
6.23
FHIR Storage (Relational)
FHIR Storage (Relational) Module
7.0
Performance Tuning
7.1
Lucene Indexing
7.2
Performance and Caching
7.3
Chained Searching and Sorting
7.4
MegaScale
7.5
FHIR Storage (MongoDB)
FHIR Storage (MongoDB) Module
8.0
MongoDB Sharding / Partitioning
8.1
Validation and Conformance
Introduction
9.0
Validation Support Repository
9.1
Validation Support Repository Options
9.2
Conformance Data
9.3
Repository Validation
9.4
Repository Validation: Java
9.5
Repository Validation: Javascript
9.6
Repository Validation: Validation Bean
9.7
Endpoint Validation
9.8
Packages and Implementation Guides
9.9
Package Registry Endpoint Module
9.10
Remote Terminology Services
9.11
Suppressing Messages
9.12
Validation Performance
9.13
Automatic Provenance Injection
9.14
Terminology
Terminology Introduction
10.0
Uploading Codes
10.1
Terminology and Lucene Indexing
10.2
ValueSet Expansion
10.3
FHIR Response Terminology Mapping
10.4
Subscription
Introduction
11.0
Architecture
11.1
Channel Types
11.2
Delivery Options
11.3
Manual Triggering
11.4
Interceptors
Interceptors
12.0
Starter Project
12.1
Examples: FHIR Endpoints
12.2
Examples: FHIR Storage
12.3
Examples: FHIR Gateway
12.4
Examples: FHIR Client
12.5
Examples: MDM
12.6
Examples: Subscription
12.7
Channel Import
Channel Import Overview
13.0
Realtime Export
Realtime Export Overview
14.0
Realtime Export Rules Definition
14.1
Using FHIRPath
14.2
Debezium
14.3
Security
Security in Smile CDR
15.0
Authentication Protocols
15.1
Authorization and Consent
15.2
Inbound Security Module
15.3
Local Inbound Security Module
15.4
LDAP Inbound Security Module
15.5
Scripted Inbound Security Module
15.6
SAML Inbound Security Module
15.7
Trusted Client Mode
15.8
Roles and Permissions
15.9
Callback Scripts
15.10
Anonymous Access
15.11
Consent Service
15.12
Consent Service: JavaScript API
15.13
Consent Service: Java API
15.14
Security Recipes
15.15
Two Factor Authentication
15.16
Troubleshooting Security
15.17
SMART on FHIR
SMART on FHIR: Introduction
16.0
SMART: Scopes
16.1
SMART: Auth Flows
16.2
SMART: Endpoints
16.3
Client Management
16.4
OIDC Keystores
16.5
SMART: Smile CDR Support
16.6
SMART Outbound Security: Module
16.7
SMART Outbound Security: Skinning
16.8
SMART Outbound Security: Context Selection
16.9
SMART Outbound Security: SAML Bridging
16.10
SMART: Federated OAuth2/OIDC Login
16.11
SMART: Application Approval/Consent
16.12
SMART Inbound Security Module
16.13
SMART: Session Management
16.14
SMART: Assigning Permissions
16.15
SMART: Access Tokens
16.16
SMART: User Profile Information
16.17
FHIR Client Authentication
16.18
appSphere
Introduction
17.0
Getting Started
17.1
Associated Module Configurations
17.2
Client Creation and Configuration
17.3
Other Configurations
17.4
Developer Portal
17.5
App Management Console
17.6
App Gallery
17.7
Appendix
17.8
FHIR Gateway
FHIR Gateway Introduction
18.0
Configuration: Initial Setup
18.1
Configuration: Document
18.2
FHIR Hybrid Providers
Hybrid Providers
19.0
REST Custom Operations
19.1
LiveBundle
LiveBundle Overview
20.0
LiveBundle API
20.1
LiveBundle Rule Definition
20.2
LiveBundle Keepers
20.3
CDS Hooks
CDS Hooks
21.0
Master Data Management
MDM
22.0
MDM Quickstart Guide
22.1
MDM Rule Definition
22.2
Using EIDs in MDM Rule Definition
22.3
MDM Survivorship Rules
22.4
Upgrading from the EMPI module
22.5
Clinical Reasoning
Overview
23.0
CQL
23.1
Measures
23.2
IG Support
International Patient Summary (IPS)
24.0
Clustering
Designing a Cluster
25.0
Migration To 2020.02
25.1
Logging
Overview
26.0
Audit Log
26.1
Transaction Log
26.2
System Logging
26.3
Troubleshooting Logs
26.4
HL7 v2.x Support
Introduction
27.0
Inbound Messaging
27.1
FHIR-Based Terminology Translation
27.2
Outbound Messaging
27.3
Outbound Messaging: Transport
27.4
Transactions
27.5
Structure Definitions
27.6
Segment Definitions
27.7
Table Definitions
27.8
Naming System Mapping
27.9
Processing Results Feeds
27.10
Protocol
27.11
CDA Exchange Module
Introduction
28.0
JavaScript Templates
28.1
Rest API Operations
28.2
Available Document and Section Types for CDA Export
28.3
Available Document and Section Types for CDA Import
28.4
JavaScript Hooks on CDA Import / Export
28.5
Further Reading
28.6
Bulk Operations
ETL Import Module
29.0
FHIR Bulk Import Operation
29.1
FHIR Bulk Export Operation
29.2
Additional Features
Da Vinci Clinical Data Exchange (CDex)
30.0
Da Vinci Health Record Exchange (HRex)
30.1
Monitoring
Monitoring Basics
31.0
Elastic APM Basics
31.1
Product Administration
Batch Job Management
32.0
JSON Admin Endpoints
JSON Admin API
33.0
Audit Log Endpoint
33.1
Batch Job Endpoint
33.2
Bulk Import Endpoint
33.3
CDA Exchange Endpoint
33.4
Metrics Endpoint
33.5
Module Config Endpoint
33.6
OpenID Connect Clients Endpoint
33.7
OpenID Connect Servers Endpoint
33.8
OpenID Connect Sessions Endpoint
33.9
Runtime Status Endpoint
33.10
System Config Endpoint
33.11
Transaction Log Endpoint
33.12
User Management Endpoint
33.13
Product Configuration
HTTP Server Setup
34.0
TLS and HTTPS Reference
34.1
Java Execution Environment
Security Attributes
35.0
Library Support
35.1
Exception Handling
35.2
Javadocs
35.3
JavaScript Execution Environment
Introduction
36.0
Specifying JavaScript in Configuration File
36.1
Remote Debugging
36.2
Converter API
36.3
Environment API
36.4
Exceptions API
36.5
OAuth2 Exceptions API
36.6
FHIR REST API
36.7
FHIR Model API
36.8
HL7 v2.x Mapping API
36.9
HTTP API
36.10
LDAP API
36.11
Log API
36.12
Composition Resource API
36.13
Composition Section API
36.14
TransactionBuilder API
36.15
Util API
36.16
UUID API
36.17
XML API
36.18
Callback Models
36.19
Database Administration
Database Design
37.0
Database Connection Pool
37.1
Setting Up PostgreSQL
37.2
Troubleshooting PostgreSQL
37.3
Setting Up MySQL
37.4
Setting Up MariaDB
37.5
Setting Up Oracle
37.6
Setting Up SQL Server (MSSQL)
37.7
AWS IAM Authentication
37.8
Localization
Localization
38.0
Examples
38.1
Available Localization Keys
38.2
Smile CDR CLI (smileutil)
Introduction
39.0
Bulk Import
39.1
Create FHIR Package
39.2
Execute Script Function
39.3
Export ConceptMap to CSV
39.4
HL7 v2.x Analyze Flat File
39.5
HL7 v2.x Transmit Flat File
39.6
Import CSV to ConceptMap
39.7
Map and Upload CSV Bulk Import File
39.8
Migrate Database
39.9
Clear Database Migration Lock
39.10
Module Config Properties Export
39.11
Reindex Terminology
39.12
Synchronize FHIR Servers
39.13
Upgrade H2 Database File
39.14
Upload Bundle Files
39.15
Upload CSV Bulk Import File
39.16
Upload Sample Dataset
39.17
Upload Terminology
39.18
Generate Realtime Export Schema
39.19
Validate FHIR Resources
39.20
Modules
JSON Admin API
40.0
Web Admin Console
40.1
CDA Exchange
40.2
Channel Import
40.3
Cluster Manager
40.4
Audit Log Persistence
40.5
Digital Quality Measures (DQM)
40.6
Enterprise Master Patient Index
40.7
CDS Hooks Endpoint
40.8
FHIR Gateway Endpoint
40.9
FHIR REST Endpoint (DSTU2)
40.10
FHIR REST Endpoint (DSTU3)
40.11
FHIR REST Endpoint (R4)
40.12
FHIRWeb Console
40.13
HL7 v2.x Listening Endpoint
40.14
HL7 v2.x Sending Endpoint
40.15
Hybrid Providers Endpoint
40.16
Package Registry Endpoint
40.17
Subscription Websocket Endpoint
40.18
ETL Importer
40.19
MDM
40.20
Narrative Generator
40.21
FHIR Storage (DSTU2 Relational)
40.22
FHIR Storage (R3 Relational)
40.23
FHIR Storage (Mongo)
40.24
FHIR Storage (R4 Relational)
40.25
Realtime Export
40.26
LDAP Inbound Security
40.27
Local Inbound Security
40.28
SAML Inbound Security
40.29
Scripted Inbound Security
40.30
SMART Inbound Security
40.31
SMART Outbound Security
40.32
SMART App Host
40.33
Subscription Matcher (All FHIR Versions)
40.34
Subscription Matcher (DSTU2 - Deprecated)
40.35
Subscription Matcher (DSTU3 - Deprecated)
40.36
Subscription Matcher (R4 - Deprecated)
40.37
appSphere
40.38
Payer to Payer
40.39
Amazon HealthLake Outbound REST Connector
40.40
License
40.41
Configuration Categories
Web Admin Console Settings
41.0
appSphere
41.1
Payer Config
41.2
Initial appSphere Seeding
41.3
Authentication Callback Scripts
41.4
Auth: General for APIs
41.5
User Authentication
41.6
Auth: HTTP Basic
41.7
Auth: OpenID Connect
41.8
Browser Syntax Highlighting
41.9
Capability Statement (metadata)
41.10
CDA Generation
41.11
CDA Import
41.12
CDA JavaScript Execution Scripts
41.13
CDS Hooks Definitions
41.14
Channel Import
41.15
Channel Retry
41.16
Kafka
41.17
Cluster Manager Maintenance
41.18
Message Broker
41.19
Cluster Level Security
41.20
Credentials
41.21
Cross-Origin Resource Sharing (CORS)
41.22
Database
41.23
Da Vinci Health Record Exchange
41.24
DQM
41.25
Email Configuration
41.26
ETL Import: CSV Properties
41.27
ETL Import: Source
41.28
FHIR Binary Storage
41.29
FHIR Bulk Operations
41.30
Capability Statement
41.31
FHIR Configuration
41.32
Consent Service
41.33
FHIR Endpoint Conversion
41.34
Interceptors
41.35
FHIR Endpoint Partitioning
41.36
Resource Providers
41.37
FHIR Endpoint Security
41.38
Endpoint Terminology
41.39
FHIR Gateway Configuration
41.40
FHIR Interceptors
41.41
LiveBundle Service
41.42
FHIR MDM Server
41.43
FHIR Performance
41.44
FHIR Performance Tracing
41.45
FHIR Realtime Export
41.46
Repository Validation
41.47
FHIR Resource Types
41.48
FHIR REST Endpoint
41.49
FHIR Search
41.50
Custom Resource Types
41.51
IG Support
41.52
MegaScale
41.53
FHIR Storage Module Scheduled Tasks
41.54
FHIR Validation Services
41.55
FHIR Storage Package Registry
41.56
FHIR Storage Partitioning
41.57
Versioned References
41.58
FHIR Subscription Delivery
41.59
FHIR Subscription Persistence
41.60
Amazon HealthLake REST Endpoint
41.61
HL7 v2.x Mapper - Contained Resource
41.62
HL7 v2.x Mapper - DG1
41.63
HL7 v2.x Mapper - Forced Namespace Mode
41.64
HL7 v2.x Mapper - General
41.65
HL7 v2.x Mapper - Medications
41.66
HL7 v2.x Mapper - OBR
41.67
HL7 v2.x to FHIR Mapper - OBSERVATION Group
41.68
HL7 v2.x to FHIR Mapper - ORDER_OBSERVATION Group
41.69
HL7 v2.x Mapper - PID
41.70
HL7 v2.x Mapper - PV1
41.71
HL7 v2.x Listener Script
41.72
HL7 v2.x MLLP Listener
41.73
HL7 v2.x MLLP Sender
41.74
FHIR to HL7 v2.x Mapper Script
41.75
HL7 v2.x Outbound Mapping
41.76
Da Vinci Health Record Exchange (HRex)
41.77
HTTP Access Log
41.78
HTTP Listener
41.79
HTTP Request Pool
41.80
HTTP Security
41.81
Hybrid Providers Definitions
41.82
Initial User Seeding
41.83
JavaScript Execution Environment
41.84
JSON Web KeySet (JWKS)
41.85
LDAP Authentication
41.86
Smile CDR License
41.87
Lucene FullText Indexing
41.88
MDM
41.89
Narrative Generator
41.90
OpenID Connect Token Validation
41.91
OpenID Connect (OIDC)
41.92
Payer to Payer
41.93
Privacy Security Notice
41.94
Provenance Injection
41.95
Realtime Export
41.96
Endpoint Validation: Request Validating
41.97
Scheduler Configuration
41.98
Search Parameter Seeding
41.99
SAML Provider
41.100
Security Inbound Script
41.101
Inbound SMART on FHIR Authentication
41.102
Inbound SMART on FHIR Endpoints
41.103
OAuth2/OIDC Federation
41.104
SMART Callback Script
41.105
Cross-Organizational Data Access Profile
41.106
SMART Login Skin
41.107
SMART Login Terms of Service
41.108
SMART Authorization
41.109
SMART Definitions Seeding
41.110
Sessions
41.111
Two Factor Authentication
41.112
TLS / SSL (Encryption)
41.113
Transaction Log
41.114
Trusted Client
41.115
User Self Registration
41.116
Product Reference
Enumerated Types
42.0
Amazon HealthLake Outbound REST Connector
Experimental
Premium
Introduction
43.0
Getting Started
43.1
Data Management and Transfer
43.2
Appendix
Preparing a Linux Host
44.0
Installing Smile CDR, NGINX and PostgreSQL in a Docker Stack
44.1
Deploying a Kubernetes Managed Cluster
44.2
Password Hashing Algorithms
44.3
Resource Paths
44.4
JWT Signature Algorithms
44.5
Inferno Considerations
44.6
40.20 MDM
40.21 Narrative Generator
Modules
40.0
JSON Admin API
40.1
Web Admin Console
40.2
CDA Exchange
40.3
Channel Import
40.4
Cluster Manager
40.5
Audit Log Persistence
40.6
Digital Quality Measures (DQM)
40.7
Enterprise Master Patient Index
40.8
CDS Hooks Endpoint
40.9
FHIR Gateway Endpoint
40.10
FHIR REST Endpoint (DSTU2)
40.11
FHIR REST Endpoint (DSTU3)
40.12
FHIR REST Endpoint (R4)
40.13
FHIRWeb Console
40.14
HL7 v2.x Listening Endpoint
40.15
HL7 v2.x Sending Endpoint
40.16
Hybrid Providers Endpoint
40.17
Package Registry Endpoint
40.18
Subscription Websocket Endpoint
40.19
ETL Importer
40.20
MDM
40.21
Narrative Generator
40.22
FHIR Storage (DSTU2 Relational)
40.23
FHIR Storage (R3 Relational)
40.24
FHIR Storage (Mongo)
40.25
FHIR Storage (R4 Relational)
40.26
Realtime Export
40.27
LDAP Inbound Security
40.28
Local Inbound Security
40.29
SAML Inbound Security
40.30
Scripted Inbound Security
40.31
SMART Inbound Security
40.32
SMART Outbound Security
40.33
SMART App Host
40.34
Subscription Matcher (All FHIR Versions)
40.35
Subscription Matcher (DSTU2 - Deprecated)
40.36
Subscription Matcher (DSTU3 - Deprecated)
40.37
Subscription Matcher (R4 - Deprecated)
40.38
appSphere
40.39
Payer to Payer
40.40
Amazon HealthLake Outbound REST Connector
40.41
License
40.22 FHIR Storage (DSTU2 Relational)
Table of Contents
Narrative Generator
40.21
Narrative Generator
40.21.1
Configuration Categories
The Narrative Generator module includes the following configuration categories:
Narrative Generator
40.20 MDM
40.21 Narrative Generator
Modules
40.0
JSON Admin API
40.1
Web Admin Console
40.2
CDA Exchange
40.3
Channel Import
40.4
Cluster Manager
40.5
Audit Log Persistence
40.6
Digital Quality Measures (DQM)
40.7
Enterprise Master Patient Index
40.8
CDS Hooks Endpoint
40.9
FHIR Gateway Endpoint
40.10
FHIR REST Endpoint (DSTU2)
40.11
FHIR REST Endpoint (DSTU3)
40.12
FHIR REST Endpoint (R4)
40.13
FHIRWeb Console
40.14
HL7 v2.x Listening Endpoint
40.15
HL7 v2.x Sending Endpoint
40.16
Hybrid Providers Endpoint
40.17
Package Registry Endpoint
40.18
Subscription Websocket Endpoint
40.19
ETL Importer
40.20
MDM
40.21
Narrative Generator
40.22
FHIR Storage (DSTU2 Relational)
40.23
FHIR Storage (R3 Relational)
40.24
FHIR Storage (Mongo)
40.25
FHIR Storage (R4 Relational)
40.26
Realtime Export
40.27
LDAP Inbound Security
40.28
Local Inbound Security
40.29
SAML Inbound Security
40.30
Scripted Inbound Security
40.31
SMART Inbound Security
40.32
SMART Outbound Security
40.33
SMART App Host
40.34
Subscription Matcher (All FHIR Versions)
40.35
Subscription Matcher (DSTU2 - Deprecated)
40.36
Subscription Matcher (DSTU3 - Deprecated)
40.37
Subscription Matcher (R4 - Deprecated)
40.38
appSphere
40.39
Payer to Payer
40.40
Amazon HealthLake Outbound REST Connector
40.41
License
40.22 FHIR Storage (DSTU2 Relational)