All Classes and Interfaces

Class
Description
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
TODO: JA - This class has only one subclass now.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Utility class to hide the complexities of obtaining ConnectionPool information
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Deprecated.
Deprecated.
Spring batch Job configuration file.
Deprecated.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Interceptor that allows for cascading deletes (deletes that resolve constraint issues).
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
We are trying to preserve null behaviour despite IBaseCoding using primitive boolean for userSelected.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Utility to hide complexity involved in obtaining connection pool information
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
This class is used to inject appropriate properties into a hibernate Properties object being used to create an entitymanager for a HAPI FHIR JPA server.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Extract search params for advanced HSearch indexing.
Query result when fetching full resources from HSearch.
Search builder for HSearch for token, string, and reference parameters.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
This interceptor for the HAPI FHIR JPA server forces all queries to be performed as offset queries.
 
 
 
 
 
 
 
Represents the SQL generated by this query
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
This class exists strictly to override the default names used to generate Hibernate Envers revision table.
 
 
 
Class includes configuration classes for both Lucene and Elasticsearch as they usually need to be updated simultaneously, and otherwise is very easy to miss the second
 
Factory for defining the analysers.
 
 
 
 
 
 
 
 
The HistoryBuilder is responsible for building history queries
 
Used to build HSearch sort clauses.
 
 
 
 
 
 
 
 
 
 
This class is used to convert between PIDs (the internal primary key for a particular resource as stored in the HFJ_RESOURCE table), and the public ID that a resource has.
 
 
 
 
 
 
 
 
 
Helper for building freetext sort clauses
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Used internally to indicate a failure to install the implementation guide
 
 
 
 
 
 
This class instructs hibernate search on how to create index names for indexed entities.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Deprecated.
Deprecated.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
This service handles writes to the CodeSystem/Concept tables within the terminology services
 
Represents the terminology translate functions
 
 
 
 
 
 
Represents ConceptMap translation and persistence operations
 
 
This service handles processing "deferred" concept writes, meaning concepts that have neen queued for storage because there are too many of them to handle in a single transaction.
This interface is the "read" interface for the terminology service.
 
 
 
 
 
 
 
This interface is used to handle differences in versions of FHIR for the terminology server.
 
 
 
 
 
 
R4+ Only
 
 
 
 
 
 
 
 
 
 
This class is a Validation support module that loads validation resources (StructureDefinition, ValueSet, CodeSystem, etc.) from the resources persisted in the JPA server.
THIS CLASS IS NOT THREAD SAFE
 
 
 
Standard resource DAO
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Builds lastN aggregation, and parse the results
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Handler to process coding type properties 'AskAtOrderEntry' and 'AssociatedObservations'.
 
 
 
 
 
 
 
 
 
 
 
Handles addition of MAP_TO properties to TermConcepts
 
 
 
 
 
 
 
 
This enum is used to facilitate configurable filenames when uploading LOINC.
 
 
 
 
The purpose of this class is to share context between steps of a given GroupBulkExport job.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Created by Jeff on 2/8/2017.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
This JPA interceptor can be configured with a collection of FHIRPath expressions, and will disable referential integrity for target resources at those paths.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
This HAPI FHIR Server Plain Provider class provides the following operations: partition-management-create-partition partition-management-update-partition partition-management-delete-partition partition-management-read-partition partition-management-list-partitions
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Logs details about the executed query
 
 
 
 
Utility class that provides a proxied entityManager.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
As always, Oracle can't handle things that other databases don't mind..
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
The whole purpose of his class is to ease construction of a non-trivial gson.JsonObject, which can't be done the easy way in this case (using a JSON string), because there are valid regex strings which break gson, as this: ".*\\^Donor$"
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Responsible for various resource history-centric and FhirContext aware operations called by BaseHapiFhirDao or BaseHapiFhirResourceDao that require knowledge of whether an Oracle database is being used.
POJO to contain the results of ResourceHistoryCalculator.calculateResourceHistoryState(IBaseResource, ResourceEncodingEnum, List)
 
 
This implementer provides the capability to persist subscription messages for asynchronous submission to the subscription processing pipeline with the purpose of offering a retry mechanism upon submission failure (see @link AsyncResourceModifiedSubmitterSvc).
 
Deprecated. 
Deprecated.
 
Deprecated.
use new batch2 reindex job
This service ensures uniqueness of resources during create or create-on-update by storing the resource searchUrl.
 
 
 
This service builds a map of resource ids to versions based on a SearchParameterMap.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
The SearchBuilder is responsible for actually forming the SQL query that handles searches for resources
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Record for search result returning the PK of a Search, and the number of associated SearchResults
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Adapt Hibernate Search SearchScroll paging result to our ISearchQueryExecutor
Figure out how we're going to run the query up front, and build a branchless strategy object.
 
A search task is a Callable task that runs in a thread pool to handle an individual search.
 
 
The purpose of this service is to define and register a job that will clean up entries created by an instance of ResourceSearchUrlSvc.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Utility to get the Spring proxy object's target object
 
Deletes old searches
 
facade over raw hook intererface
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Interceptor which requires newly created subscriptions to be in SubscriptionStatusEnum.REQUESTED state and prevents clients from changing the status.
Interceptor which requires newly created subscriptions to be in Subscription.SubscriptionStatus.REQUESTED state and prevents clients from changing the status.
Interceptor which requires newly created subscriptions to be in Subscription.SubscriptionStatus.REQUESTED state and prevents clients from changing the status.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Allows hibernate search to index individual concepts' properties
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
This enum is used to indicate the pre-expansion status of a given ValueSet in the terminology tables.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Used by CascadingDeleteInterceptor to handle DeleteConflictLists in a thead-safe way.
 
 
This interceptor uses semaphores to avoid multiple concurrent FHIR transaction bundles from processing the same records at the same time, avoiding concurrency issues.
 
 
 
 
 
 
 
 
 
Adapt the autocomplete result into a ValueSet suitable for our $expand extension.